Package index • vitalBayes

All functions

M_chen_watanabe_L0(): Chen-Watanabe Natural Mortality (\(L_0\) Parameterization)
M_lorenzen(): Lorenzen Natural Mortality Model
M_peterson_wroblewski(): Peterson-Wroblewski Natural Mortality Model
compare_growth_models(): Compare Multiple Growth Models
compare_loo(): Compare Models Using LOO
compare_pooling(): Compare Pooling Effects
compute_k_vb_equivalent(): Compute Von Bertalanffy-Equivalent Growth Coefficient
compute_loo(): LOO Cross-Validation for vitalBayes Models
create_loo_table(): Create LOO Comparison Table
create_parameter_table(): Create Parameter Summary Table
extract_growth_parameters(): Extract Life History Parameters from Growth Model Posterior
fit_bayesian_birth(): Fit Bayesian Length-at-Birth Model
fit_bayesian_growth(): Fit Bayesian Individual Growth Models
fit_bayesian_maturity(): Fit Bayesian Maturity Models
get_stochastic_mortality(): Stochastic Estimation of Age-Specific Natural Mortality
is_colorblind_safe(): Check if Palette is Colorblind-Friendly
list_vital_palettes(): List Available Color Palettes
plot_birth_ogive(): Plot Birth Ogive
plot_growth_curve(): Plot Growth Curves
plot_maturity_ogive(): Plot Maturity Ogive
plot_residuals(): Plot Residual Diagnostics
ppc_summary(): Posterior Predictive Summary
precompile_models(): Precompile Stan models shipped with vitalBayes
print(<vitalBayes_ppc>): Print PPC Summary
scale_mortality(): Scale Mortality Schedule to Target via Cumulative Hazard
simulate_survivorship(): Monte Carlo Simulation of Survivorship
imbalanced_data growth_data limited_data: Simulated von Bertalanffy datasets
theme_vital(): vitalBayes ggplot2 Theme
vital_colors(): Vital Package Color Palette
vital_palette(): vitalBayes Extended Color Palette